Dr. Tatiana Tatarinova

2023

Ooi, Siew-Eng; Sarpan, Norashikin; Taranenko, Elizaveta; Feshah, Ishak; Nuraziyan, Azimi; Roowi, Siti Habsah; Burhan, Muhammad Nazmi; Jayanthi, Nagappan; Rahmah, Abdul Rahman Siti; Teh, Ooi-Kock, Small RNAs and Karma methylation in Elaeis guineensis mother palms are linked to high clonal mantling, Plant molecular biology, 111, 45021, 345-363, Springer Netherlands Dordrecht

Deviatiiarov, Ruslan M.; Gams, Anna; Kulakovskiy, Ivan V.; Buyan, Andrey; Meshcheryakov, Georgy; Syunyaev, Roman; Singh, Ramesh; Shah, Palak; Tatarinova, Tatiana V.; Gusev, Oleg, An atlas of transcribed human cardiac promoters and enhancers reveals an important role of regulatory elements in heart failure, Nature Cardiovascular Research, https://www.nature.com/articles/s44161-022-00182-x

Das, Ranajit; Savina, Ekaterina A; Tatarinova, Tatiana V; Orlov, Yuriy L, Population and ancestry specific variation in disease susceptibility, Frontiers in Genetics, 14, 1267719, Frontiers
Zeng, Tian Chen; Vyazov, Leonid M; Kim, Alexander; Flegontov, Pavel N; Sirak, Kendra; Maier, Robert; Lazaridis, Iosif; Akbari, Ali; Frachetti, Michael; Tishkin, Aleksei A, Postglacial genomes from foragers across Northern Eurasia reveal prehistoric mobility associated with the spread of the Uralic and Yeniseian languages, bioRxiv, 2023.10. 01.560332, Cold Spring Harbor Laboratory

2022

Das, Ranajit; Tatarinova, Tatiana V; Galieva, Elvira R; Orlov, Yuriy L, Association Between Individuals’ Genomic Ancestry and Variation in Disease Susceptibility, Frontiers in genetics, 13, 831320, Frontiers Media SA

Bondar, Eugeniya I.; Troukhan, Maxim E.; Krutovsky, Konstantin V.; Tatarinova, Tatiana V., Genome-Wide Prediction of Transcription Start Sites in Conifers, Int. J. Mol. Sci., 23, 3, 1735, MDPI

Kaneva, Kristiyana; Schurr, Theodore G; Tatarinova, Tatiana V; Buckley, Jonathan; Merkurjev, Daria; Triska, Petr; Liu, Xiyu; Done, James; Maglinte, Dennis T; Deapen, Dennis, Mitochondrial DNA haplogroup, genetic ancestry, and susceptibility to Ewing sarcoma, Mitochondrion, 67, 45091, Elsevier

Gusareva, Elena S; Kharkov, Vladimir N; Tatarinova, Tatiana; Gourav, Ghosh Amit; Kalsi, Namrata; Zarubin, Aleksei A; Drautz-Moses, Daniela I; Schuster, Stephan C; Stepanov, Vadim A; Kim, Hie Lim, Genetic Adaptation to Climate in Human Populations, GENETIC EPIDEMIOLOGY, 46, 7, 497-498, WILEY 111 RIVER ST, HOBOKEN 07030-5774, NJ USA

Efimov, Igor; Gams, Anna; Deviatiiarov, Ruslan; Kulakovskiy, Ivan; Buyan, Andrey; Singh, Ramesh; Shah, Palak; Gusev, Oleg; Tatarinova, Tatiana, Sex modulates the human genome regulatory network during heart failure and aging., ,

2021

Yamada, W.M.; Neely, M.N.; Bartroff, J.; Bayard, D.S.; Burke, J.V.; van Guilder, M.; Jelliffe, R.W.; Kryshchenko, A.; Leary, R.; Tatarinova, T., An Algorithm for Nonparametric Estimation of A Multivariate Mixing Distribution with Applications to Population Pharmacokinetics, Pharmaceutics, 13, 1, 42, Multidisciplinary Digital Publishing Institute

Pachganov, S.; Murtazalieva, K.; Zarubin, A.; Taran, T.; Chartier, D.; Tatarinova, T.V., Prediction of Rice Transcription Start Sites Using TransPrise: A Novel Machine Learning Approach, Rice Genome Engineering and Gene Editing. Methods in Molecular Biology, 2238, https://doi.org/10.1007/978-1-0716-1068-, Humana, New York, NY.

Ochir-Goryaeva, Maria A; Kornienko, Igor V; Faleeva, Tatiana G; Aramova, Olga Yu; Makhotkin, Mikhail A; Kekeev, Erdni A; Burataev, Evgeny G; Kukanova, Viktoria V; Sidorenko, Yurij S; Chartier, Duane R, Ancestry and identity in Bronze Age Catacomb culture burials: A meta-tale of graves, skeletons, and DNA, Journal of Archaeological Science: Reports, 37, 102894, Elsevier

Kornienko, I. V.; Faleeva, T. G.; Aramova, O. Yu.; Ochir-Goryaeva, M. A.; Batieva, E. F.; Vdovchenkov, E. V.; Moshkov, N. E.; Kukanova, V. V.; Sidorenko, I. N. Ivanov Yu. S.; Tatarinova, T. V., Y-chromosome Haplogroup Diversity in Khazar Burials from Southern Russia, Russian Journal of Genetics, 57, 4, 477-488, Pleiades Publishing, Inc

Bakoev, Siroj; Getmantseva, Lyubov; Kostyunina, Olga; Bakoev, Nekruz; Prytkov, Yuri; Usatov, Alexander; Tatarinova, Tatiana V, Genome-wide analysis of genetic diversity and artificial selection in Large White pigs in Russia, PeerJ, 9, e11595, PeerJ Inc.

Benítez-Burraco, Antonio; Chekalin, Evgeny; Bruskin, Sergey; Tatarinova, Tatiana; Morozova, Irina, Recent selection of candidate genes for mammal domestication in Europeans and language change in Europe: a hypothesis, Annals of Human Biology, https://doi.org/10.1080/03014460.2021.19, Taylor & Francis

Bakoev, S; Traspov, A; Getmantseva, L; Belous, A; Karpushkina, T; Kostyunina, O; Usatov, A; Tatarinova, TV, Detection of genomic regions associated malformations in newborn piglets: a machine-learning approach, PeerJ, 9, e11580, 10.7717/peerj.11580,

Sarpan, N; Tatarinova, TV; Low, E-T L; Ong-Abdullah, M; Sapian, IS; Ooi, S-E, Histone Modification Marks Improve Identification Of Oil Palm Transcription Start Sites, Journal of Oil Palm Research, 21, https://doi.org/10.21894/jopr.2021.0021,

Deviatiiarov, Ruslan; Gams, Anna; Syunyaev, Roman; Tatarinova, Tatiana; Singh, Ramesh; Shah, Palak; Gusev, Oleg; Efimov, Igor, The atlas of human cardiac promoters and enhancers reveals an important role for regulatory elements in heart failure, ,

Orlov, Yuriy L; Tatarinova, Tatiana V; Anashkina, Anastasia A, Bioinformatics applications to reveal molecular mechanisms of gene expression regulation in model organisms, International journal of molecular sciences, 22, 21, 11973, MDPI

Gams, Anna; Deviatiiarov, Ruslan; Roman, Syunyaev; Tatarinova, Tatiana V; Singh, Ramesh; Shah, Palak; Gusev, Oleg; Efimov, Igor R, Atlas of Human Cardiac Promoters Reveals Regulatory Shift Between Healthy and Failing States, Circulation, 144, Suppl_1, A12468-A12468, Lippincott Williams & Wilkins Hagerstown, MD

Orlov, Yuriy L; Anashkina, Anastasia A; Tatarinova, Tatiana V; Baranova, Ancha V, Bioinformatics of Genome Regulation, Volume II, Frontiers in genetics, 12, 795257, Frontiers Media SA

Orlov, Yuriy L; Tatarinova, Tatiana V; Oparina, Nina Y; Galieva, Elvira R; Baranova, Ancha V, Bioinformatics of Genome Regulation, Volume I, Frontiers in genetics, 12, 803273, Frontiers

Moshkov, N; Smetanin, A; Tatarinova, TV, Local ancestry prediction with PyLAE, PeerJ, 9, https://doi.org/10.7717/peerj.12502, e12502,

Protsenko, L; Andreev, A; Tatarinova, T, Comparative analysis of genomic assemblies, repertoire of repeats, and protein-coding genes of palm trees Elaeis guineensis (pisifera) and Elaeis oleifera, ,

Gentzbittel, L; Ben, C; Mazurier, M; Varshney, RK; Roorkiwal, M; Tatarinova, TV, TO PREDICT THE ADAPTATION OF PLANTS AND THEIR ASSOCIATED MICROORGANISMS BY COMBINING POPULATION GENOMICS AND BIOGEOGRAPHY, Материалы II Международной научно-практической конференции «Геномика и современные биотехнологии в размножении, селекции и сохранении растений», 26-26,

2020

Bakoev, S.; Getmantseva, L.; Kolosova, M.; Kostyunina, O.; Chartier, D.; Tatarinova, T.V., PigLeg: Prediction of Swine Phenotype Using Machine Learning, PeerJ, 10.7717/peerj.8764,

Tatarinova, T.V.; Deiss, T.; Franckle, L.; Beaven, S.; Davis, J., The Impact of MNRI Therapy on the Levels of Neurotransmitters Associated with Inflammatory Processes, Int. J. Mol. Sci., 21, 4, 1358, MDPI

Sarpan, Norashikin; Taranenko, Elizaveta; Ooi, Siew-Eng; Low, Eng-Ti Leslie; Espinoza, Alejandro; Tatarinova, Tatiana V.; Ong-Abdullah, Meilina, DNA methylation changes in clonally propagated oil palm, Plant Cell Reports, 10.1007/s00299-020-02561-9, Springer

Deviatiiarov, Ruslan M; Gams, Anna; Syunyaev, Roman; Tatarinova, Tatiana V; Gusev, Oleg; Efimov, Igor R, Human library of cardiac promoters and enhancers, BioRxiv, 10.1101/2020.06.14.150904,

Deviatiiarov, Ruslan; Gams, Anna; Syunyaev, Roman; Tatarinova, Tatiana; Gusev, Oleg; Efimov, Igor, Human atlas of cardiac promoters and enhancers reveals important role of regulatory elements in heritable diseases

Makarenko, Maksim; Usatov, Alexander; Tatarinova, Tatiana; Azarin, Kirill; Kovalevich, Alexey; Gavrilova, Vera; Horn, Renate, The Investigation of perennial sunflower species (Helianthus L.) mitochondrial genomes, Genes, 11, 9, 982, Mdpi

Orlov, Yuriy L; Baranova, Ancha V; Tatarinova, Tatiana V, Bioinformatics methods in medical genetics and genomics, International journal of molecular sciences, 21, 17, 6224, MDPI

Tatarinova, Tatiana V; Baranova, Ancha V; Anashkina, Anastasia A; Orlov, Yuriy L, Genomics and Systems Biology at the “Century of Human Population Genetics” conference, BMC genomics, 21, 7, 44929, BioMed Central

Orlov, Yuriy L; Galieva, Elvira R; Tatarinova, Tatiana V, Bioinformatics research at SBB-2019, BMC bioinformatics, 21, 11, 44932, BioMed Central

Bondar, Eugeniia I; Sharov, Vadim V; Kuzmin, Dmitry A; Tatarinova, Tatiana V; Krutovsky, Konstantin V, Genome-wide prediction of transcription start site in four conifer species, BIOINFORMATICS OF GENOME REGULATION AND STRUCTURE/SYSTEMS BIOLOGY (BGRS/SB-2020), 300-301,

Tatarinova, Tatiana V; Tabikhanova, Ludmila E; Eslami, Gilda; Bai, Haihua; Orlov, Yuriy L, Genetics research at the” Centenary of human population genetics” conference and SBB-2019, BMC genetics, 21, 44930, BioMed Central

Smetanin, Alexander; Moshkov, Nikita; Tatarinov, Tatiana V., Local Ancestry Prediction with PyLAE, BioRxiv, https://doi.org/10.1101/2020.11.13.38010,

2019

Tatarinova, Tatiana V.; Chen, Ming; Orlov, Yuriy L., Bioinformatics research at BGRS-2018, BMC Bioinformatics, 20, doi.org/10.1186/s12859-018-2566-7, Springer Nature

Ji, Jianling; Shen, Lishuang; Bootwalla, Moiz; Quindipan, Catherine; Maglinte, Dennis; Tatarinova, Tatiana; Buckley, Jonathan David; Raca, Gordana; Saitta, Sulagna; Tatarinova, . Tatiana, A semi-automated whole exome sequencing workflow leads to increased diagnostic yield and identification of novel candidate variants, Molecular Case Studies,

Makarenko, Maksim S; Usatov, Alexander V; Tatarinova, Tatiana V; Azarin, Kirill V; Logacheva, Maria D; Gavrilova, Vera A; Horn, Renate, Characterization of the mitochondrial genome of the MAX1 type of cytoplasmic male-sterile sunflower, BMC plant biology, 19, 1, 41-47, BioMed Central

Fuentes, Roven Rommel; Chebotarov, Dmytro; Duitama, Jorge; Smith, Sean; la Hoz, Juan Fernando De; Mohiyuddin, Marghoob; Wing, Rod A.; McNally, Kenneth L.; Tatarinova, Tatiana; Grigorie, Andrey, Structural variants in the 3,000 rice genomes, Genome Research, 10.1101/gr.241240.118,

Deiss, Trina; Meyers, Rebekah; Whitney, Jordan; Bell, Clayton; Tatarinova, Тatiana; Franckle, Lorri; Beaven, Susan, Physiological Markers and Reflex Pattern Progression in Individuals with Neurodevelopmental Deficits Utilizing the MNRI Method, Neuroscience & Medicine, 10, 1, 10.4236/nm.2019.101003, Scientific research

Orlov, Yuriy L.; Tatarinova, Tatiana V.; Kochetov, Alex V., Computational models in genetics at BGRS-2018, BMC Genetics, Suppl 1: 20,

Orlov, Yuriy L; Hofestädt, Ralf; Tatarinova, Tatiana V, Bioinformatics research at BGRS\SB-2018, Journal of bioinformatics and computational biology, 17, 1, 1902001, World Scientific Publishing Company

Gentzbittel, Laurent; Ben, Cécile; Mazurier, Mélanie; Shin, Min-Gyoung; Lorenz, Todd; Rickauer, Martina; Marjoram, Paul; Nuzhdin, Sergey V.; Tatarinova, Tatiana V., WhoGEM: An admixture-based prediction machine accurately predicts quantitative functional traits in plants, Genome Biology, 20, 106, 10.1186/s13059-019-1697-0,

Pachganov, Stepan; Murtazalieva, Khalimat; Zarubin, Alexei; Sokolov, Dmitry; Chartier, Duane; Tatarinova, Tatiana V, TransPrise: a novel machine learning approach for eukaryotic promoter prediction, PeerJ, 7, e7990, https://doi.org/10.7717/peerj.7990, PeerJ Inc.

Stepanov, V. A.; Kharkov, V. N.; Vagaitseva, K. V.; Khitrinskaya, I. Yu.; Bocharova, A. V.; Kolesnikov, N. A.; Zarubin, A. A.; Popovich, A. A.; Marusin, A. V.; Swarovskaya, M. G., Signals of Positive Selection in Human Populations of Siberia and European Russia, Russian Journal of Genetics, 55, 10,

Bell, Clayton; Whitney, Jordan; Deiss, Trina; Tatarinova, Тatiana; Franckle, Lorri; Beaven, Susan; Davis, Jeffrey, The Effect of the MNRI Method on Neurotransmitters Markers of Individuals with Neurodevelopmental Disorders, Neuroscience & Medicine, 10, 3, 10.4236/nm.2019.103022,

Makarenko, Maksim; Usatov, Alexander; Tatarinova, Tatiana; Azarin, Kirill; Logacheva, Maria; Gavrilova, Vera; Kornienko, Igor; Horn, Renate, Organization features of the mitochondrial genome of sunflower (Helianthus annuus L) with ANN2-type male-sterile cytoplasm, Plants, 8, 11, 439, MDPI

Fuentes, Roven Rommel; Chebotarov, Dmytro; Castellanos, Jorge A Duitama; Smith, Sean; De La Hoz, Juan; Mohiyuddin, Marghoob; Wing, Rod; McNally, Kenneth; Tatarinova, Tatiana; Grigoriev, Andrey, Structural Variation in the 3000 Rice Genomes, Plant and Animal Genome XXVII Conference (January 12-16, 2019), PAG

Mikheyev, Alexander; Qiu, Lijun; Zarubin, Alexei; Moshkov, Nikita; Orlov, Yuri; Chartier, Duane; Faleeva, Tatiana; Kornienko, Igor; Klyuchnikov, Vladimir; Batieva, Elena, Diverse genetic origins of medieval steppe nomad conquerors, BioRxiv, https://www.biorxiv.org/content/10.1101/2019.12.15.876912v1.full

Laurent, Gentzbittel; Cécile, Ben; Mélanie, Mazurier; Min-Gyoung, Shin; Todd, Lorenz; Martina, Rickauer; Paul, Marjoram; Nuzhdin, Sergey V; Tatarinova, Tatiana V, WhoGEM: An admixture-based prediction machine accurately predicts quantitative functional traits in plants, ,

Orlov, Y; Tatarinova, T, 11th International Multiconference” Bioinformatics of Genome Regulation and Structure\Systems Biology”-BGRS\SB2018, Novosibirsk, Russia, 20-25 August 2018., BMC Bioinformatics, 20, Suppl. 1, 33-38, BioMed Central Ltd

2018

Orlov, Yuriy L; Tatarinova, Tatiana V; Zakhartsev, Maksim V; Kolchanov, Nikolay A, Introduction to the 9th young scientists school on systems biology and bioinformatics (SBB’2017), Journal of bioinformatics and computational biology, 16, 1, 1802001-1802001, Imperial College Press

Sanusi, Nik Shazana Nik Mohd; Rosli, Rozana; Halim, Mohd Amin Ab; Lim, Chan Kuang; Nagappan, Jayanthi; Azizi, Norazah; Amiruddin, Nadzirah; Tatarinova, Tatiana V.; Low, Eng- Ti Leslie, PalmXplore: Oil Palm Gene Database, DATABASE, 1, https://doi.org/10.1093/database/bay095,

Chekalin, Evgeny; Rubanovich, Alexandr; Tatarinova, Tatiana V.; Kasianov, Artem; Bender, Nicole; Chekalina, Marina; Staub, Kaspar; Koepke, Nikola; Rühli, Frank; Bruskin, Sergey, Changes in biological pathways during 6,000 years of civilization in Europe, Molecular Biology and Evolution, https://doi.org/10.1093/molbev/msy201, Oxford University Press

Orlov, YL; Wong, L; Tatarinova, TV; Hofestädt, R; Kolchanov, NA, Systems biology research at the SBB young scientists school series, Integrative Bioinformatics and Systems Biology (WIBSB-2018): First Sino-Russian, 53,

Chen, Ming; Okunev, Alexey G; Zhang, Hongyu; Shanmughavel, Piramanayagam; Hofestädt, Ralf; Li, Guoliang; Tatarinova, Tatiana V; Dobrovolskaya, Oxana B; Galieva, Elvira R; Tsukanov, Anton V, Integrative Bioinformatics and Systems Biology (WIBSB-2018): First Sino-Russian, ,

Tatarinova, T; Solovyev, V; Alexandrov, N; Baranova, A; Kel, A, Algorithms for prediction and analysis of regulatory regions, Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB-2018), 191-191,

Gentzbitte, L; Ben, C; Mazurier, M; Shin, MG; Lorenz, T; Rickauer, M; Marjoram, P; Nuzhdin, SV; Tatarinova, TV, Genome admixture components accurately predict quantitative functional traits in plants, Integrative Bioinformatics and Systems Biology (WIBSB-2018), 37-38,

Tatarinova, Tatiana, Deep Learning Approach to Eukaryotic Promoter Prediction, Plant and Animal Genome XXVI Conference (January 13-17, 2018), PAG

Mikheyev, A; Batyeva, E; Klyuchniov, V; Orlov, Yu; Moshkov, N; Dmitrievsky, I; Lorentz, T; Tatarinova, T, Genetic footprints of medieval nomads on the crossroads of civilizations in Southern Russian, Biodiversity: Genomics and Evolution (BioGenEvo-2018), 31-31,

2017

Chan, Kuang-Lim; Rosli, Rozana; Tatarinova, Tatiana; Hogan, Michael; Firdaus-Raih, Mohd; Low, Eng-Ti Leslie, Seqping: Gene Prediction Pipeline for Plant Genomes using Self-Trained Gene Models and Transcriptomic Data, BMC Bioinformatics, 18, 1426, Cold Spring Harbor Labs Journals

Lim, Chan Kuang; Tatarinova, Tatiana V.; Rosli, Rozana; Amiruddin, Nadzirah; Azizi, Norazah; Ab Halim, Mohd Amin; Shazana, Nik; Sanusi, Nik Mohd; Nagappan, Jayanthi; Ponomarenko, Petr, Evidence-based gene models for structural and functional annotations of the oil palm genome, Biology direct, 12, 21, 10.1186/s13062-017-0191-4,

Tatarinova, Tatiana; Nikolsky, Yuri, Biological Networks and Pathway Analysis, , Springer

Triska, Martin; Ivliev, Alexander; Nikolsky, Yuri; Tatarinova, Tatiana, Analysis of cis-Regulatory Elements in Gene Co-expression Networks in Cancer, Methods in Molecular Biology, 1613, 291-310, Springer

Zolotarenko, A; Chekalin, E; Mehta, R; Baranova, A; Tatarinova, T; Bruskin, S, Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments, Methods in Molecular Biology, 1613, 355-370, Springer

Kel, Alexander; Tatarinova, Tatiana, TRANSFAC-ing the rice genome, Moscow Conference on Computational Molecular Biology (MCCMB 2017), 32-32,

Ponomarenko, P.; Ryutov, A.; Maglinte, D.T.; Baranova, A.; Tatarinova, T.V.; Gai, X, Clinical utility of the low-density Infinium QC genotyping Array in a genomics-based diagnostics laboratory, BMC Medical Genomics, 10, 57,

Triska, M; Solovyev, V; Baranova, A; Kel, A; Tatarinova, T, Nucleotide patterns aiding in prediction of eukaryotic promoters, PLOS ONE, 12, 11, e0187243,

Triska, Petr; Chekanov, Nikolay; Stepanov, Vadim; Khusnutdinova, Elza K.; Kumar, Ganesh Prasad Arun; Akhmetova, Vita; Babalyan, Konstantin; Boulygina, Eugenia; Kharkov, Vladimir; Gubina, Marina, Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe, BMC Genetics, 18, 110, http://rdcu.be/DC0g,

Orlov, Yuriy L.; Baranova, Ancha V.; Tatarinova, Tatiana V.; Kolchanov, Nikolay A., Genetics at Belyaev Conference – 2017: introductory note, BMC Genetics, 18, 116,

Ben, C; Sbeiti, A; Mazurier, M; Toueni, M; Negahi, A; Rickauer, M; Nuzhdin, S; Tatarinova, T; Gentzbittel, L, MINING NATURAL VARIATION TO UNDERSTAND QUANTITATIVE DISEASE RESISTANCES: A CASE STUDY FOR RESISTANCE TO ROOT DISEASE IN MEDICS, NI VAVILOV’S IDEAS IN THE MODERN WORLD, 103-103,

Kuang Lim, Chan; Tatarinova, Tatiana V; Rosli, Rozana; Amiruddin, Nadzirah; Azizi, Norazah; Halim, Mohd Amin Ab; Sanusi, Nik Shazana Nik Mohd; Nagappan, Jayanthi; Ponomarenko, Petr; Triska, Martin, Evidence-based gene models for structural and functional annotations of the oil palm genome, arXiv e-prints, arXiv: 1702.07246,

2016

Flegontov, Pavel; Changmai, Piya; Zidkova, Anastassiya; Logacheva, Maria D.; Flegontova, Olga; Gelfand, Mikhail S.; Gerasimov, Evgeny S.; Khrameeva, Ekaterina V.; Konovalova, Olga P.; Neretina, Tatiana, Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry, Sci. Rep., 6, srep20768, doi: 10.1038/srep20768, Nature Publishing Group

Tatarinova, Tatiana V.; Lysnyansky, Inna; Nikolsky, Yuri V.; Bolshoy, Alexander, The mysterious orphans of Mycoplasmataceae, Biology Direct, 11, 2, 10.1186/s13062-015-0104-3, Springer

Li, Wenhui L.; Buckley, Jonathan; Sanchez-Lara, Pedro A.; Maglinte, Dennis T.; Viduetsky, Lucy; Tatarinova, Tatiana V.; Aparicio, Jennifer G.; Kim, Jonathan; Au, Margaret; Ostrow, Dejerianne, A Rapid and Sensitive Next Generation Sequencing Method to Detect RB1 Mutations Improves Care for Retinoblastoma Patients and Their Families,
Journal of Molecular Diagnostics, http://dx.doi.org/10.1016/j.jmoldx.2016, Association for Molecular Pathology (AMP)

Tatarinova, Tatiana, Paleo-Eskimo and Siberians, Genome,

Morozova, Irina; Flegontov, Pavel; Mikheyev, Alexander S.; Bruskin, Sergey; Asgharian, Hosseinali; Ponomarenko, Petr; Klyuchnikov, Vladimir; ArunKumar, GaneshPrasad; Prokhortchouk, Egor; Gankin, Yuriy, Toward high-resolution population genomics using archaeological samples, DNA Research, doi: 10.1093/dnares/dsw029 DNA Res, OUP

Zolotarenko, Alena; Chekalin, Evgeny; Mesentsev, Alexandre; Kiseleva, Ludmila; Gribanova, Elena; Mehta, Rohini; Baranova, Ancha; Tatarinova, Tatiana V.; Piruzian, Eleonora; Bruskin, Sergey, Integrated computational approach to the analysis of RNA-Seq data reveals new transcriptional regulators for psoriasis, Experimental & Molecular
Medicine, 48, e268, doi:10.1038/emm.2016.97,

Tatarinova, Tatiana; Chekalin, Evgeny; Nikolsky, Yuri; Chebotarov, Dmitry; McNally, Kenneth; Alexandrov, Nickolai, Nucleotide diversity analysis highlights functionally important genomic regions, Scientific Reports, 6, www.nature.com/articles/srep35730, 35730, Spinger Nature

2015

Kryschenko, Alyona; Tatarinova, Tatiana, Nonparametric Methods for Prediction and Analysis of Promoters in Model Organisms, Plant and Animal Genome XXIII Conference, Plant and Animal Genome

ArunKumar, GaneshPrasad; Tatarinova, Tatiana V.; Duty, Jeff; Rollo, Debra; Syama, Adhikarla; Arun, Varatharajan Santhakumari; Kavitha, Valampuri John; Triska, Petr; Greenspan, Bennett; Wells, R. Spencer, Genome-wide signatures of male-mediated migration shaping the Indian gene pool, Journal of Human Genetics, 1, 7, Nature Publishing Group

Rahman, Farzana; Hassan, Mehedi; Kryshchenko, Alona; Dubchak, Inna; Tatarinova, Tatiana V; Alexandrov, Nickolai, BenchNGS: An approach to benchmark short reads alignment tools, arXiv preprint arXiv:1504.06659,

Kozlov, K; Chebotarev, D; Hassan, M; Triska, M; Triska, P; Flegontov, P; Tatarinova, TV, Differential Evolution approach to detect recent admixture, BMC Genomics, 16, Suppl 8, S9, BioMed Central Ltd.

Gentzbittel, Laurent; Ben, Cecile; Mazurier, Melanie; Shin, Min-Gyoung; Triska, Martin; Rickauer, Martina; Nikolsky, Yuri; Marjoram, Paul; Nuzhdin, Sergey; Tatarinova, Tatianа, Whole-genome modeling accurately predicts quantitative traits in plants, bioRxiv, http://dx.doi.org/10.1101/030395,

2014

Tatarinova, Tatiana; Schumitzky, Alan, Nonlinear Mixture Models: A Bayesian Approach, , Imperial College Press

Elhaik, Eran; Tatarinova, Tatiana; Klyosov, Anatole; Graur, Dan, The “Extremely Ancient” Chromosome that Isn’t: A Forensic Bioinformatics Investigation of Albert Perry’s X-degenerate Portion of the Y Chromosome, European Journal of Human Genetics, Nature

Elhaik, Eran; Pellegrini, Matteo; Tatarinova, Tatiana, Gene expression and nucleotide composition are associated with genic methylation level in Oryza sativa, BMC Bioinformatics, 15, 23, http://www.biomedcentral.com/1471-2105/15/23/

Elhaik, Eran; Tatarinova, Tatiana; Chebotarev, Dmitri; Piras, Ignazio S.; Calò, Carla Maria; Montis, Antonella De; Atzori, Manuela; Marini, Monica; Tofanelli, Sergio; Francalacci, Paolo, Geographic Population Structure of worldwide human populations infers biogeographical origin, Nature Comm., 5,

Bolshoy, A; Salih, B; Cohen, I; Tatarinova, T, Ranking of prokaryotic genomes based on maximization of sortedness of gene lengths, Journal of Data Mining in Genomics & Proteomics (JDMGP), 5, 1, 10.4172/2153-0602.100015, OMICS

Elhaik, Eran; Tatarinova, Tatiana; Klyosov, Anatole; Graur, Dan, Reply to Mendez et al: the ‘extremely ancient’ chromosome that still isn’t, European Journal of Human Genetics, Nature Publishing Group

Elhaik, Eran; Tatarinova, Tatiana V; Klyosov, Anatole A; Graur, Dan, An extended reply to Mendez et al.: The’extremely ancient’chromosome that still isn’t, arXiv preprint arXiv:1410.3972,

Tatarinova, Tatiana V.; Salih, Bilal; Bard, Jennifer Dien; Cohen, Irit; Bolshoy, Alexander, Lengths of orthologous prokaryotic proteins are affected by evolutionary factors, BioMed Research International, Molecular Phylogenetics 2014, Hindawi

Tatarinova, Tatiana; Schumitzky, Alan, A Bayesian Approach, , Imperial College Press

Alexandrov, Nickolai; Apuya, Nestor; Brover, Vyacheslav; Dumas, Jean-Baptiste; Fang, Yiwen; Feldmann, Ken; Jofuku, Diane; Kiegle, Edward A; Kimmerly, Bill; Kwok, Shing, Promoter, promoter control elements, and combinations, and uses thereof, , US Patent 8,877,916

2013

Ahmad, Touqeer; Sablok, Gaurav; Tatarinova, Tatiana V; Xu, Qiang; Guo, Wen-Wu, Evaluation of Codon Biology in Citrus and Poncirus trifoliata Based on Genomic Features and Frame Corrected Expressed Sequence Tags, DNA Research,

Tatarinova, T; Sablok, G, DNA Methylation: Principles, Mechanisms and Challenges, , Nova

Tatarinova, Tatiana; Neely, Michael; Bartroff, Jay; van Guilder, Michael; Yamada, Walter; Bayard, David; Jelliffe, Roger; Leary, Robert; Chubatiuk, Alyona; Schumitzky, Alan, Two general methods for population pharmacokinetic modeling: non-parametric adaptive grid and non-parametric Bayesian, Journal of Pharmacokinetics and Pharmacodynamics, 40, 1, 189-199, Springer US

Sonkin, D; Hassan, M; Murphy, D; Tatarinova, T, Tumor Suppressors Status in Cancer Cell Line Encyclopedia, Molecular Oncology, 10.1016/j.molonc.2013.04., Elsevier

Cook, Zhihong; Fang, Yiwen; Feldmann, Kenneth A; Kiegle, Edward; Kwok, Shing; Lu, Yu-Ping; Medrano, Leonard; Pennell, Roger; Schneeberger, Richard; Wu, Chuan-Yin, Promoter, promoter control elements, and combinations, and uses thereof, , US Patent App. 13/664,313

Triska, Martin; Grocutt, David; Southern, James; Murphy, David; Tatarinova, Tatiana, cisExpress: Motif Detection in DNA Sequences, Bioinformatics, Oxford Journals

Tatarinova, Tatiana; Elhaik, Eran; Pellegrini, Matteo, Cross-species analysis of genic GC3 content and DNA methylation patterns, Genome Biology and Evolution, 5, 8, Oxford Journals

Tatarinova, Tatiana; Kryshchenko, Alona; Triska, Martin; Hassan, Mehedi; Murphy, Denis; Neely, Michael; Schumitzky, Alan, NPEST: a nonparametric method and a database for Transcription Start Site prediction, Quantitative Biology, http://link.springer.com/article/10.1007/s40484-01

Tatarinova, Tatiana; Kryshchenko, Alona; Triska, Martin; Hassan, Mehedi; Murphy, Denis; Neely, Michael; Schumitzky, Alan, RESEARCH ARTICLE NPEST, ,

2012

Pérez-Quintero, Álvaro L; Sablok, Gaurav; Tatarinova, Tatiana V; Conesa, Ana; Kuo, Jimmy; López, Camilo, Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua, Biotechnology letters, 34, 737-745, Springer Netherlands

Tatarinova, (editor) Tatiana, DNA Methylation – from Genomics to Technology, , ISBN-979-953-307-453-4

Elhaik, Eran; Tatarinova, Tatiana, GC3 Biology in Eukaryotes and Prokaryotes, DNA Methylation – From Genomics to Technology, 55-68, ISBN: 978-953-51-0320-2

Neely, M; Tatarinova, T; Bartroff, J; van Guilder, M; Yamada, W; Bayard, D; Jelliffe, R; Schumitzky, A, I-33 Michael Neely Non-Parametric Bayesian Fitting: A Novel Approach to Population Pharmacokinetic Modeling, ,

Bolshoy, A; Tatarinova, T, Methods of Combinatorial Optimization to Reveal Factors Affecting Gene Length, Bioinformatics and Biology Insights, 6, 317-327, Liberitas Academica

de Vere, Natasha; Rich, Tim CG; Ford, Col R; Trinder, Sarah A; Long, Charlotte; Moore, Chris W; Satterthwaite, Danielle; Davies, Helena; Allainguillaume, Joel; Ronca, Sandra, DNA barcoding the native flowering plants and conifers of Wales, PloS one, 7, 6, e37945, Public Library of Science

Kerton, Owain, DNA METHYLATION–FROM GENOMICS TO TECHNOLOGY, DNA Methylation-From Genomics to Technology,

Tatarinova, Tatiana V; Artificial microRNAs (amiRNAs) engineering–on how microRNA-based silencing methods have affected current plant silencing research, ,

Tatarinova, Tatiana V; Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua, ,

Rahman, Farzana; Tatarinova, Tatiana V, Bioinformatic analysis of fruit-specific expressed sequence tag libraries of Diospyros kaki Thunb.: view at the transcriptome at different developmental stages

Rich, Tim CG; Steinke, Dirk; de Vere, Natasha; Ford, Col R; Trinder, Sarah A; Long, Charlotte; Moore, Chris W; Satterthwaite, Danielle; Davies, Helena; Allainguillaume, Joel, DNA barcoding the native flowering plants and conifers of wales, PLoS ONE, 7, 6, Public Library of Science

2011

Jelliffe, Roger; Neely, Michael; Schumitzky, Alan; Bayard, David; Van Guilder, Michael; Botnen, Andreas; Bustad, Aida; Laing, Derek; Yamada, Walter; Bartroff, Jay, Nonparametric population modeling and Bayesian analysis, Pharmacological Research, 4, 64, 426,

Solovyev, Victor V; Tatarinova, Tatiana V, Towards the integration of genomics, epidemiological and clinical data, , BioMed Central

Sablok, Gaurav; Pérez-Quintero, Álvaro L; Hassan, Mehedi; Tatarinova, Tatiana V; López, Camilo, Artificial microRNAs (amiRNAs) engineering–On how microRNA-based silencing methods have affected current plant silencing research, Biochemical and biophysical research communications, 406, 3, 315-319, Academic Press

Sablok, Gaurav; Nayak, Kinshuk Chandra; Vazquez, Franck; Tatarinova, Tatiana V, Synonymous codon usage, GC 3, and evolutionary patterns across plastomes of three pooid model species: Emerging grass genome models for monocots, Molecular biotechnology, 49, 116-128, Humana Press Inc

Sablok, Gaurav; Luo, Chun; Lee, Wan Sin; Rahman, Farzana; Tatarinova, Tatiana V; Harikrishna, Jennifer Ann; Luo, Zhengrong, Bioinformatic analysis of fruit-specific expressed sequence tag libraries of Diospyros kaki Thunb.: view at the transcriptome at different developmental stages, 3 Biotech, 1, 35-45, Springer Berlin Heidelberg

2010

Tatarinova, Tatiana V; Alexandrov, Nickolai N; Bouck, John B; Feldmann, Kenneth A, GC 3 biology in corn, rice, sorghum and other grasses, BMC genomics, 11, 44944, BioMed Central

Tatarinova, Tatiana V; Alexandrov, Nickolai N; Bouck, John B; Feldmann, Kenneth A, biology in corn, rice, sorghum and other grasses

2009

Alexandrov, Nickolai N; Brover, Vyacheslav V; Freidin, Stanislav; Troukhan, Maxim E; Tatarinova, Tatiana V; Zhang, Hongyu; Swaller, Timothy J; Lu, Yu-Ping; Bouck, John; Flavell, Richard B, Insights into corn genes derived from large-scale cDNA sequencing, Plant molecular biology, 69, 44928, 179-194, Springer Netherlands Dordrecht

Troukhan, Maxim; Tatarinova, Tatiana; Bouck, John; Flavell, Richard B; Alexandrov, Nickolai N, Genome-wide discovery of cis-elements in promoter sequences using gene expression, OMICS A Journal of Integrative Biology, 13, 2, 139-151, Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801

2008

Tatarinova, Tatiana; Bouck, John; Schumitzky, Alan, KULLBACK–LEIBLER MARKOV CHAIN MONTE CARLO—A NEW ALGORITHM FOR FINITE MIXTURE ANALYSIS AND ITS APPLICATION TO GENE EXPRESSION DATA, Journal of bioinformatics and computational biology, 6, 4, 727-746, Imperial College Press

2006

Alexandrov, Nickolai N; Troukhan, Maxim E; Brover, Vyacheslav V; Tatarinova, Tatiana; Flavell, Richard B; Feldmann, Kenneth A, Features of Arabidopsis genes and genome discovered using full-length cDNAs, Plant molecular biology, 60, 69-85, Kluwer Academic Publishers

Tatarinova, T; Schumitzky, A, Multiple Collapse Clustering, Fifth International Conference on Bioinformatics of Genome Regulation and Structure, 184-187,

Tatarinova, Tatiana; Bouck, John; Schumitzky, Alan, KullbackLeibler Markov Chain Monte Carlo (KLMCMC)–a new algorithm for finite mixture analysis and its application to gene expression data

2005

Schneeberger, Richard G; Zhang, Ke; Tatarinova, Tatiana; Troukhan, Max; Kwok, Shing F; Drais, Josh; Klinger, Kevin; Orejudos, Francis; Macy, Kimberly; Bhakta, Amit, Agrobacterium T-DNA integration in Arabidopsis is correlated with DNA sequence compositions that occur frequently in gene promoter regions, Functional & integrative genomics, 5, 4, 240-253, Springer-Verlag

2003

Tatarinova, Tatiana; Brover, Vyacheslav; Troukhan, Maxim; Alexandrov, Nickolai, Skew in CG content near the transcription start site in Arabidopsis thaliana, Bioinformatics, 19, suppl_1, i313-i314, Oxford University Press

2001

Tatarinova, Tatiana; Chubatiuk, Alyona; Neely, Michael; Schumitzky, Alan, NonPEST: a nonparametric method for Transcription Start Site prediction, Development, 15, 2503-2508,

1994

Tatarinova, TV; Rashba, EI; Efros, AL; Continuum excitons in the fractional-quantum-Hall-effect regime: Steps in the filling-factor dependence of the energy, Physical Review B, 50, 23, 17349, APS